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Faculty Research

See our faculty research work in bioinformatics and related  areas .

Dr. Wei Chen

• Wei Chen, Ali Sekmen, Barry D. Bruce, Khoa Nguyen, P. Mishra, L. Emujakporue, K. Wehbi "Computational Approaches for Predicting Interaction Sites of Cytochrome and Photosystem I", 5th International Conference on Bioinformatics and Computational Biology, March, 2013.

Dr. Ali Sekmen  

• Wei Chen,  Ali Sekmen,  Barry D. Bruce, Khoa Nguyen,  P. Mishra, L. Emujakporue, K. Wehbi " Computational Approaches for Predicting Interaction Sites of Cytochrome and Photosystem I",  5th International Conference on Bioinformatics and Computational Biology, March, 2013.

Dr. Al Nasr Kamal

• Al Nasr, K., Ranjan, D., Zubair, M., Chen, L., He, J., "Solving the Secondary Structure Matching Problem in CryoEM De Novo Modeling using a Constrained K-shortest Path Graph Algorithm", IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), accepted.
• Al Nasr, K., Liu, C., Rwebangira, M., Burge, L., He, J., "Intensity-Based Skeletonization of CryoEM Grayscale Images Using a True Segmentation-Free Algorithm", IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB). Vol. 10, No. 5, pp. 1289-1298, October 2013.
• McKnight, A., Si, D., Al Nasr, K., Chernikov, A., Chrisochoides, N., He, J., "Estimating Loop Length from CryoEM Images at Medium Resolutions", BMC Structural Biology, 13(Suppl 1):S5, November 2013.
• Biswas, A., Si, D., Al Nasr, K., Ranjan, D., Zubair, M., He, J., "Improved Effeciency in CryoEM Secondary Structure Topology Determination from Inaccurate Data", Journal of Bioinformatics and Computational Biology (JBCB), Vol. 10, No. 3, June 2012.
• Si, D., Ji, S., Al Nasr, K., He, J., "A Machine Learning Approach for the Identification of Protein Secondary Structure Elements from cryoEM Density Maps", Biopolymers, Vol. 97, No. 9, September 2012, pp. 698-708.
• Al Nasr, K., Ranjan, D., Zubair, M., He, J., "Ranking valid topologies of the Secondary Structure Elements Using A Constraint Graph", Journal of Bioinformatics and Computational Biology (JBCB), Vol. 9, No. 3, June 2011, pp. 415-430.
• Al Nasr, K., Chen, L., He, J., “A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps”, Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB), Washington DC, September 2013, pp. 479-455.

Dr. Wang Xianfei

• Wang, X.; Byers, S. Copy Number Variation in Chickens: A Review and Future Prospects. Microarrays 2014, 3, 24-38. (http://www.mdpi.com/2076-3905/3/1/24) 

 

Other related research work

 

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